I’m almost done putting the finishing touches on a new Genetic Map display. Intended as a drop-in replacement for the Acedb GMap, the new Genetic Map leverages the GBrowse infrastructure providing a familiar user interface as that for browsing the genome.
I still need to fix a few small things (what in the hell is a centi-centi-Morgan?) 🙂 RD also asked if it might be possible to display mapping data. I think some small modifications of my code that I use for calculating confidence intervals should be sufficient for generating spans for both 2- and 3- factor crosses. The display might get a little complicated displaying separate spans for each experiment – it might be better to aggregate like-experiments together?