Todd Harris, PhD

Facilitating scientific discovery at the intersection of genetics, genomics, bioinformatics, big data, cloud computing, and open science.

  • About

Implementing a simple web-log based recommender system

July 25, 2008 By Todd Harris Leave a Comment

I’ve now implemented such a system as an extension to Catalyst, the open source Perl web framework. The system isn’t yet ready for general distribution, but I’d like to share my approach.

First, I’ve gathered ten years of web access logs from WormBase, a generic model organism database where I work as the project manager.

Next, I correlated IP addresses with requests and tried to trace browsing patterns from one object to the next. This isn’t an exact science since we haven’t historically tried to uniquely identify users.

Data is loaded into a simple MySQL schema with object and object2related tables. Expediently simple.

Share this:

  • Twitter
  • Facebook
  • LinkedIn

Filed Under: development Tagged With: catalyst, implementation, model organism database, Perl, recommender, recommender system, social media, UI

Welcome!
My name is Todd Harris. A geneticist by training, I now work at the intersection of biology and computer science developing tools and systems to organize, visualize, and query large-scale genomic data across a variety of organisms.

I'm driven by the desire to accelerate the pace of scientific discovery and to improve the transparency and reproducibility of the scientific process.

Stay in touch!

Enter your address to receive notifications of new posts by email.

Join 1,296 other subscribers

Copyright © 2023 · Genesis Sample Theme on Genesis Framework · WordPress · Log in